Correction to: Alignment of Biological Sequences with Jalview
نویسندگان
چکیده
Author(s): Procter, James B; Carstairs, G Mungo; Soares, Ben; Mourao, Kira; Ofoegbu, T Charles; Barton, Daniel; Lui, Lauren; Menard, Anne; Sherstnev, Natasha; Roldan-Martinez, David; Duce, Suzanne; Martin, David MA; Geoffrey J
منابع مشابه
The Jalview Java alignment editor
Multiple sequence alignment remains a crucial method for understanding the function of groups of related nucleic acid and protein sequences. However, it is known that automatic multiple sequence alignments can often be improved by manual editing. Therefore, tools are needed to view and edit multiple sequence alignments. Due to growth in the sequence databases, multiple sequence alignments can o...
متن کاملContextual Alignment of Biological Sequences ( Extended
We present a model of contextual alignment of biological sequences. It is an extension of the classical alignment, in which we assume that the cost of a substitution depends on the surrounding symbols. In this model the cost of transforming one sequence into another depends on the order of editing operations. We present efficient algorithms for calculating this cost, as well as reconstructing (...
متن کاملParametric Alignment of Multiple Biological Sequences
The alignment problem of DNA or protein sequences is very applicable and important in various elds of molecular biology. In this problem, the obtained optimal solution with xed parameters (gap penalties, weights for weighted multiple alignment problems, and so on) is not always the biologically best alignment. Thus, it is required to vary parameters and check the varying optimal alignments. The...
متن کاملContextual alignment of biological sequences (Extended abstract).
We present a model of contextual alignment of biological sequences. It is an extension of the classical alignment, in which we assume that the cost of a substitution depends on the surrounding symbols. In this model the cost of transforming one sequence into another depends on the order of editing operations. We present efficient algorithms for calculating this cost, as well as reconstructing (...
متن کاملContextual alignment of biological sequences ( Extended abstract ) Anna Gambin
We present a model of contextual alignment of biological sequences. It is an extension of the classical alignment, in which we assume that the cost of a substitution depends on the surrounding symbols. In this model the cost of transforming one sequence into another depends on the order of editing operations. We present efficient algorithms for calculating this cost, as well as reconstructing (...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Methods in molecular biology
سال: 2021
ISSN: ['1940-6029', '1064-3745']
DOI: https://doi.org/10.1007/978-1-0716-1036-7_18